Groups

Crystallography

Ubiquitin Biology

Parasitology

Cell Signaling and Metabolism

Chromatin Biology and Epigenetics

Integral Membrane Protein

Biophysics

Biotechnology

Informatics

Engineering

Administration

Help

Ubiquitinbiology / UHRF 1 RING Domain

Cut&Paste the following text files directly into the command line of PyMol


reinitialize

fetch 3FL2, ri1; set_title, 3FL2, 1, "UHRF1 Ring"
fetch 1z6u, ri2; set_title, 1z6u, 1, "UHRF2 Ring"
fetch 2c2v; # CRYSTAL STRUCTURE OF THE CHIP-UBC13-UEV1A COMPLEX

symexp syma, ri1m, (/ri1m//a/761), 3.0
alter /syma*/a/a, chain='B'
create ri1, ri1m+syma*

align /ri1//a, /ri2//a
align /2c2v//s, /ri2//a

bg 1
stereo
set stick_radius = 0.15
set label_color = 0
set label_font_id, 10
set label_size, 15
set sphere_scale=.4

disable
enable ri1
hide all
show cartoon, /ri1//a
show spheres, /ri1////zn
color magenta, /ri1////zn
set_view (\\ 0.389642984, 0.655143082, -0.647278428,\\ -0.699215293, 0.667861879, 0.255067557,\\ 0.599398851, 0.353199363, 0.718312323,\\ 0.000013947, 0.000043165, -172.867431641,\\ 17.341808319, 8.369472504, 9.047367096,\\ 145.249206543, 200.477569580, 0.000000000 )
scene F1, store

disable
enable ri2
hide all
show cartoon, /ri2//a
show spheres, /ri2///1-2/zn
color magenta, /ri2///1-2/zn
set_view (\\ 0.389642984, 0.655143082, -0.647278428,\\ -0.699215293, 0.667861879, 0.255067557,\\ 0.599398851, 0.353199363, 0.718312323,\\ 0.000013947, 0.000043165, -172.867431641,\\ 17.341808319, 8.369472504, 9.047367096,\\ 145.249206543, 200.477569580, 0.000000000 )
scene F2, store

show nonbonded, /ri2 within 10 of /ri2///1-2/zn
show lines, /ri2 within 10 of /ri2///1-2/zn
dist d01, /ri2, /ri2///1-2/zn, 4, 3
hide labels, d01
set_view (\\ -0.091379561, 0.738990605, -0.667492747,\\ -0.684221983, 0.440422088, 0.581265509,\\ 0.723529100, 0.509826779, 0.465386301,\\ -0.000013512, 0.000050925, -87.054367065,\\ 18.488159180, 14.210401535, 15.696909904,\\ 59.437541962, 114.665908813, 0.000000000 )
scene F3, store

disable
enable ri1+ri2
hide all
show ribbon
show lines
show nonbonded
show spheres, ////1-2/zn
color magenta, ////1-2/zn
set_view (\\ -0.091379561, 0.738990605, -0.667492747,\\ -0.684221983, 0.440422088, 0.581265509,\\ 0.723529100, 0.509826779, 0.465386301,\\ -0.000013512, 0.000050925, -87.054367065,\\ 18.488159180, 14.210401535, 15.696909904,\\ 59.437541962, 114.665908813, 0.000000000 )
scene F4, store

scene F1


Page last modified on March 22, 2009, at 07:25 PM
   © 2003-2007 Structural Genomics Consortium. All rights reserved.